.. XylemTRAPnetwork documentation master file, created by
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Welcome to the ARAGNE App Documentation
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**ARAGNE** for Arabidopsis Gene Network Explorer: A Tool for Network Analysis and Functional Enrichment in Arabidopsis thaliana.

**ARAGNE** aims to explore cell-type-specific translatomes to identify the molecular actors involved in maintaining sugar homeostasis across various xylem cell types, using a combination of R and Cytoscape integrated within an R Shiny application.


Program Information
-------------------

**Authors**:
   - **Mohamad Yassine** 
      - Email: mohamad.yassine@inrae.fr
   - **Collaborators**: 
      - **Rozenn Le Hir**
         - Email: rozenn.le-hir@inrae.fr

**Initial Release Date**: 19 August 2024

**Last Updated**: 29 January 2025

**Current Version**: 1.0

Overview
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This application enables the analysis of gene expression data and the visualization of network interactions, with a specific focus on genes of interest if provided.


Contents
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.. toctree::
   usage
   cytoscape_setup
   prerequisites
   Application_guide